|
Class II vs genes (cf. legend of table 3). |
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| HMM state |
A. thaliana |
|||
|
|
||||
| E1 |
CG (-0.75) |
CT (-0.51) |
CC (-0.48) |
CA (-0.29) |
| E2 |
CT (-0.59) |
TA (0.35) |
TC (-0.28) |
TG (0.27) |
| E3 |
TC (-0.72) |
CC (-0.58) |
CG (-0.48) |
AT (0.38) |
| I |
CC (-1.06) |
CA (-0.48) |
GC (-0.41) |
GT (0.38) |
|
|
||||
| HMM state |
C. elegans |
|||
|
|
||||
| E1 |
GT (0.42) |
GC (0.41) |
CC (0.35) |
TG (-0.35) |
| E2 |
CG (0.54) |
TG (0.43) |
AG (0.38) |
TA (0.33) |
| E3 |
GG (0.67) |
GC (0.57) |
CG (0.38) |
CA (-0.36) |
| I |
AA (-0.26) |
CG (0.22) |
TC (0.15) |
AC (0.13) |
|
|
||||
| HMM state |
D. melanogaster |
|||
|
|
||||
| E1 |
AA (1.59) |
TA (1.32) |
GG (-1.28) |
AT (1.24) |
| E2 |
GG (-0.84) |
TT (0.67) |
AA (0.64) |
CT (-0.62) |
| E3 |
TA (1.47) |
CC (-1.34) |
AA (1.28) |
TT (1.01) |
| I |
GC (-1.08) |
CC (-1.00) |
CG (-0.95) |
TC (-0.76) |
Andrieu et al. BMC Bioinformatics 2004 5:94 doi:10.1186/1471-2105-5-94 |
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