Table 4

Summary of hole-filling results.


Pathway/Genome Database



MtbRv
Caulo
Vcho

missing reactions w/ isozyme seqs
195
162
156
putative enzymes found at P > 0.9
84
71
82
fillers with borderline P (0.5 to 0.9)
37
17
11
holes with no BLAST hits
8
7
7
holes filled with ORFs at P > 0.8
9
2
6
newly completed pathways at P > 0.9
18
17
17
newly completed pathways at P > 0.8
20
14
17

Green and Karp BMC Bioinformatics 2004 5:76   doi:10.1186/1471-2105-5-76