Resolution:
## Figure 2.
Partial logo (positions 172–209) of the Pfam pkinase model. Positions with narrow
match state stacks are likely to be deleted in typical family members. The total width
of a red-shaded (dark+light) stack visualizes the expected number of inserted letters.
The left dark-shaded part of the stack's width represents the probability that at
least one letter is inserted. The difference is illustrated by comparing I
_{173 }with I_{176}: Both states have approximately the same expected contribution, but the hitting probability
of I_{176 }is higher. The insertion stack height is zero for all shown examples because the emission
probabilities correspond to the background frequencies.
Schuster-Böckler |