Table 2

Gene prediction performance Performance figures for SNAP are derived from 5-fold cross-validation. At Arabidopsis thaliana, Ce Caenorhabditis elegans, Dm Drosophila melanogaster, Os Oryza sativa. SN and SP correspond to sensitivity and specificity.

Nucleotide

Exon

Gene

Genome

Gene finder

SN

SP

SN

SP

SN

SP


At

SNAP

97.1

95.2

82.9

81.2

54.3

46.8

Genscan

79.9

92.9

65.3

71.2

19.5

21.3

Ce

SNAP

97.6

94.2

85.5

79.3

46.0

32.5

Genefinder

98.1

95.3

89.2

86.1

51.6

48.0

Genscan

81.3

91.6

48.6

66.4

10.2

9.6

HMMGene

84.1

97.0

58.9

71.7

20.9

19.6

Dm

SNAP

94.3

86.5

78.6

67.2

50.8

37.5

Augustus

92.4

88.6

77.2

68.2

50.7

31.9

Genscan

84.5

81.1

68.7

62.9

22.1

20.0

Os

SNAP

86.2

94.0

70.2

72.4

51.2

37.0

Genscan

70.3

89.8

58.2

74.8

25.9

32.0


Korf BMC Bioinformatics 2004 5:59   doi:10.1186/1471-2105-5-59

Open Data