Table 5 |
||||
|
Top predictions not annotated as CCPs in the reference set. The 50 top-scoring protein pairs not annotated in our reference set (so-called "false positives") with results of a further search for pre-existing evidence of CCP. 15 of them are shown to be true CCPs according to YPD. |
||||
|
Rank |
Protein 1 |
Protein 2 |
Score |
YPD Complex Annotation |
|
|
||||
|
1 |
Rpl40Bp |
Rps31p |
0.943 |
|
|
2 |
Rps31p |
Rpl40Ap |
0.938 |
|
|
3 |
Smc1p |
Smc3p |
0.864 |
Cohesin |
|
4 |
Gpt2p |
Sec28p |
0.857 |
|
|
5 |
Pwp2p |
Utp13p |
0.844 |
Small subunit processome |
|
5 |
Sgn1p |
Pub1p |
0.844 |
|
|
7 |
Rdh54p |
Rad5p |
0.833 |
|
|
7 |
Arp3p |
Rvs167p |
0.833 |
|
|
7 |
Arp3p |
Srv2p |
0.833 |
|
|
10 |
Spt5p |
Rpb3p |
0.800 |
Paf1p complex |
|
10 |
Spt5p |
Rpo21p |
0.800 |
Paf1p complex |
|
12 |
Pwp2p |
Dip2p |
0.776 |
Small subunit processome |
|
12 |
Pwp2p |
Ylr409C |
0.776 |
|
|
12 |
Sap190p |
Sap155p |
0.776 |
|
|
12 |
Sap190p |
Sap185p |
0.776 |
|
|
12 |
Pph21p |
Pph22p |
0.776 |
|
|
12 |
Nop7p |
Fpr4p |
0.776 |
|
|
12 |
Sap185p |
Sap155p |
0.776 |
|
|
12 |
Sik1p |
Cbf5p |
0.776 |
|
|
12 |
Nop2p |
Ebp2p |
0.776 |
Pre-60S ribosomal particle |
|
12 |
Rpa135p |
Ret1p |
0.776 |
|
|
22 |
Pwp2p |
Asc1p |
0.750 |
|
|
22 |
Drs1p |
Spb4p |
0.750 |
|
|
24 |
Rsm10p |
Mrps5p |
0.744 |
Mrp4p-associated complex (mitochondrial ribosome) |
|
24 |
Mtr3p |
Rrp45p |
0.744 |
Exosome 3'-5' exoribonuclease complex |
|
24 |
Rrp40p |
Rrp46p |
0.744 |
Exosome 3'-5' exoribonuclease complex |
|
24 |
Rrp40p |
Ski6p |
0.744 |
Exosome 3'-5' exoribonuclease complex |
|
28 |
Fun12p |
Cbf5p |
0.743 |
|
|
28 |
Mrpl16p |
Yml025Cp |
0.743 |
|
|
28 |
Mrpl1p |
Mrpl9p |
0.743 |
|
|
28 |
Mrpl9p |
Ypl183C-Ap |
0.743 |
|
|
28 |
Rrp40p |
Rrp45p |
0.743 |
Exosome 3'-5' exoribonuclease complex |
|
33 |
Gin4p |
Kcc4p |
0.727 |
|
|
33 |
Ecm16p |
Prp43p |
0.727 |
|
|
35 |
Rps27Ap |
Rpl42Bp |
0.714 |
|
|
35 |
Rps17Bp |
Rpl36Ap |
0.714 |
|
|
35 |
Rps4Ap |
Rpp2Ap |
0.714 |
|
|
35 |
Dur1,2p |
Pdb1p |
0.714 |
|
|
35 |
Rsm7p |
Mrps5p |
0.714 |
Mrp4p-associated complex (mitochondrial ribosome) |
|
40 |
Pat1p |
Lsm2p |
0.692 |
mRNA decay complex |
|
40 |
Hrp1p |
Nab2p |
0.692 |
|
|
42 |
Mrpl1p |
Mrpl10p |
0.684 |
|
|
42 |
Mrpl9p |
Yml025Cp |
0.684 |
|
|
44 |
Lsm2p |
Dhh1p |
0.667 |
45S penta-snRNP |
|
44 |
Pat1p |
Dhh1p |
0.667 |
45S penta-snRNP |
|
46 |
Dyn1p |
Cdc55p |
0.667 |
|
|
46 |
Emp24p |
Fks1p |
0.667 |
|
|
46 |
Yef3p |
Act1p |
0.667 |
|
|
46 |
Yef3p |
Pph22p |
0.667 |
|
|
46 |
Asc1p |
Tfp1p |
0.667 |
|
|
|
||||
|
Zhang et al. BMC Bioinformatics 2004 5:38 doi:10.1186/1471-2105-5-38 |
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