Iterative Group Analysis (iGA): A simple tool to enhance sensitivity and facilitate interpretation of microarray experiments
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* Corresponding author: Rainer Breitling r.breitling@bio.gla.ac.uk
BMC Bioinformatics 2004, 5:34 doi:10.1186/1471-2105-5-34
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Software
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists Eran Eden, Roy Navon, Israel Steinfeld, Doron Lipson, Zohar Yakhini BMC Bioinformatics 2009, 10:48 (3 February 2009) |
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Pathways affected by asbestos exposure in normal and tumour tissue of lung cancer patients Salla Ruosaari, Tuija Hienonen-Kempas, Anne Puustinen, Virinder K Sarhadi, Jaakko Hollmén, Sakari Knuutila, Juha Saharinen, Harriet Wikman, Sisko Anttila BMC Medical Genomics 2008, 1:55 (11 November 2008) |
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Gene set analyses for interpreting microarray experiments on prokaryotic organisms Nathan L Tintle, Aaron A Best, Matthew DeJongh, Dirk Van Bruggen, Fred Heffron, Steffen Porwollik, Ronald C Taylor BMC Bioinformatics 2008, 9:469 (5 November 2008) |
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Software
Evert Blom, Rainer Breitling, Klaas Hofstede, Jos BTM Roerdink, Sacha AFT van Hijum, Oscar P Kuipers BMC Genomics 2008, 9:495 (21 October 2008) |
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Research article
M-BISON: Microarray-based integration of data sources using networks Bernie J Daigle, Russ B Altman BMC Bioinformatics 2008, 9:214 (25 April 2008) |
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Carina von Schantz, Juha Saharinen, Outi Kopra, Jonathan D Cooper, Massimiliano Gentile, Iiris Hovatta, Leena Peltonen, Anu Jalanko BMC Genomics 2008, 9:146 (28 March 2008) |
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Methodology article
Antonio Marco, Ignacio Marín BMC Bioinformatics 2007, 8:442 (15 November 2007) |
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Poster presentation
A global statistical test for improved detection of gene activity David JG Bakewell, Ernst Wit BMC Systems Biology 2007, 1(Suppl 1):P10 (8 May 2007) |
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Research article
Gene expression profiles in asbestos-exposed epithelial and mesothelial lung cell lines Penny Nymark, Pamela M Lindholm, Mikko V Korpela, Leo Lahti, Salla Ruosaari, Samuel Kaski, Jaakko Hollmén, Sisko Anttila, Vuokko L Kinnula, Sakari Knuutila BMC Genomics 2007, 8:62 (1 March 2007) |
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Methodology article
Comparing functional annotation analyses with Catmap Thomas Breslin, Patrik Edén, Morten Krogh BMC Bioinformatics 2004, 5:193 (9 December 2004) |
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Methodology article
Graph-based iterative Group Analysis enhances microarray interpretation Rainer Breitling, Anna Amtmann, Pawel Herzyk BMC Bioinformatics 2004, 5:100 (23 July 2004) Graph-based iterative Group Analysis (GiGA), a graph-based approach to identify biologically relevant changes in expression data, visually enhances microarray interpretation.
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