SIGI: score-based identification of genomic islands
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Correspondence: Rainer Merkl rmerkl@gwdg.de
BMC Bioinformatics 2004, 5:22 doi:10.1186/1471-2105-5-22
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BioMed Central: 9 citations
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Research article
A quantitative account of genomic island acquisitions in prokaryotes Tom E Roos, Mark WJ van Passel BMC Genomics 2011, 12:427 (24 August 2011) |
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Research article
Christian Rödelsperger, Ralf J Sommer BMC Evolutionary Biology 2011, 11:239 (15 August 2011) |
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Research article
Evaluation of genomic island predictors using a comparative genomics approach Morgan GI Langille, William WL Hsiao, Fiona SL Brinkman BMC Bioinformatics 2008, 9:329 (5 August 2008) |
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Methodology article
On detection and assessment of statistical significance of Genomic Islands Raghunath Chatterjee, Keya Chaudhuri, Probal Chaudhuri BMC Genomics 2008, 9:150 (1 April 2008) |
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Research article
Modelling the evolution of the archaeal tryptophan synthase Rainer Merkl BMC Evolutionary Biology 2007, 7:59 (10 April 2007) |
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Research
P-value based visualization of codon usage data Peter Meinicke, Thomas Brodag, Wolfgang Fricke, Stephan Waack Algorithms for Molecular Biology 2006, 1:10 (29 June 2006) |
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Software
Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models Stephan Waack, Oliver Keller, Roman Asper, Thomas Brodag, Carsten Damm, Wolfgang Fricke, Katharina Surovcik, Peter Meinicke, Rainer Merkl BMC Bioinformatics 2006, 7:142 (16 March 2006) Score-based identification of genomic islands uses hidden Markov models and codon-usage bias to identify foreign genetic regions within microbial genomes and assign them to a putative donor.
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Methodology article
A computational approach for identifying pathogenicity islands in prokaryotic genomes Sung Ho Yoon, Cheol-Goo Hur, Ho-Young Kang, Yeoun Hee Kim, Tae Kwang Oh, Jihyun F Kim BMC Bioinformatics 2005, 6:184 (21 July 2005) |
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Software
GenomeViz: visualizing microbial genomes Rohit Ghai, Torsten Hain, Trinad Chakraborty BMC Bioinformatics 2004, 5:198 (15 December 2004) |