Table 2

Correspondence of external biological keywords and ProtoNet clusters after and before compression.

External Source

ProtoNet Mean CS (before compression)^a

Random Mean CS (before compression)

InterPro all

0.808 (0.835)

0.025 (0.026)

GO molecular function

0.558 (0.588)

0.020 (0.024)

SCOP family

0.702 (0.720)

0.124 (0.299)

SCOP superfamily

0.635 (0.654)

0.116 (0.260)

SCOP fold

0.580 (0.598)

0.107 (0.230)

ENZYME entry

0.643 (0.848)

0.090 (0.179)

ENZYME sub-subclass

0.471 (0.517)

0.036 (0.053)

ENZYME subclass

0.371 (0.412)

0.018 (0.025)

^aCS – correspondence score, see text for definition.

Kaplan et al. BMC Bioinformatics 2004 5:196   doi:10.1186/1471-2105-5-196