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Description of databases used for similarity searches. |
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| Source |
Tier* |
Database |
Link |
|
|
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| ribosomal RNA |
1 |
RBP II |
http://rdp.cme.msu.edu |
| mitochondrial proteins |
2 |
NCBI |
ftp://ftp.ncbi.nih.gov/blast/db/ |
| protein sequences |
3 |
SwissProt/TrEMBL |
http://ca.expasy.org/sprot/ |
|
*the stage in which the database is used in prot4EST pipeline (see Figure 2). | |||
Wasmuth and Blaxter BMC Bioinformatics 2004 5:187 doi:10.1186/1471-2105-5-187 |
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