Table 4

Accuracy percentiles and characteristics of models from 50 cross-validation samples of DS2, 700 <m/z < 12000

Algorithm

Test Set Accuracy 25th, 75th

Median # Clusters

Median # Markers

Proportion of Perfect Chromosomes


GA(p1 = 0, p2 = 0)

.70, .80

91.5

17

1.0

GA(0, .001)

.63, .75

100

11

1.0

GA(0, .002)

.61, .74

100

10

1.0

GA(.002, 0)

.89, .93

22.5

19.5

.86

GA(.002, .001)

.88, .93

22

14.5

.90

GA(.002, .002)

.87, .91

22

8

.86

GA(.005, 0)

.88, .93

7

19

.20

GA(.005, .001)

.88, .93

7

11

.20

GA(.005, .002)

.87, .93

7

6

.16

GA(.008, 0)

.86, .91

5

18

.02

GA(.008, .001)

.86, .91

5

10

.04

GA(.008, .002)

.86, .91

5

4

.02

Best GA

.88, .93

7

12

.24

Boosting

.92, .95

NA

NA

NA

PAM

.83, .86

NA

NA

NA


Jeffries BMC Bioinformatics 2004 5:180   doi:10.1186/1471-2105-5-180

Open Data