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CLOE: Identification of putative functional relationships among genes by comparison of expression profiles between two species

Maurizio Pellegrino, Paolo Provero, Lorenzo Silengo and Ferdinando Di Cunto*

BMC Bioinformatics 2004, 5:179 doi:10.1186/1471-2105-5-179

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Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata

Gaëlle Lelandais, Véronique Tanty, Colette Geneix, Catherine Etchebest, Claude Jacq, Frédéric Devaux Genome Biology 2008, 9:R164 (24 November 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Comparative transcriptomics of Saccharomyces cerevisiae and Candida glabrata revealed a remarkable conservation of response to drug-induced stress, despite underlying differences in the regulatory networks.

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A new computational approach to analyze human protein complexes and predict novel protein interactions

Sara Zanivan, Ilaria Cascone, Chiara Peyron, Ivan Molineris, Serena Marchio, Michele Caselle, Federico Bussolino Genome Biology 2007, 8:R256 (4 December 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A new approach to identifying interacting proteins based on gene-expression data uses hypergeometric distribution and Monte-Carlo simulations.

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