VisANT: an online visualization and analysis tool for biological interaction data
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* Corresponding author: Charles DeLisi delisi@bu.edu
BMC Bioinformatics 2004, 5:17 doi:10.1186/1471-2105-5-17
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BioMed Central: 11 citations
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Software
Constructing a fish metabolic network model Shuzhao Li, Alexander Pozhitkov, Rachel A Ryan, Charles S Manning, Nancy Brown-Peterson, Marius Brouwer Genome Biology 2010, 11:R115 (29 November 2010) The first genome-wide fish metabolic model, MetaFishNet, is presented.
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Method
Bolan Linghu, Evan S Snitkin, Zhenjun Hu, Yu Xia, Charles DeLisi Genome Biology 2009, 10:R91 (3 September 2009) An evidence-weighted functional-linkage network of human genes reveals associations among diseases that share no known disease genes and have dissimilar phenotypes |
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Software
JNets: Exploring networks by integrating annotation Jamie I MacPherson, John W Pinney, David L Robertson BMC Bioinformatics 2009, 10:95 (26 March 2009) |
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Software
GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments Andreas Keller, Christina Backes, Maher Al-Awadhi, Andreas Gerasch, Jan Küntzer, Oliver Kohlbacher, Michael Kaufmann, Hans-Peter Lenhof BMC Bioinformatics 2008, 9:552 (22 December 2008) |
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Research
In silico regulatory analysis for exploring human disease progression Dustin T Holloway, Mark Kon, Charles DeLisi Biology Direct 2008, 3:24 (18 June 2008) Machine learning methods are employed to predict targets of transcription factors in the human genome and further provide possible insights on Wt1 and its role in Wilms Tumor.
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Research
Classifying transcription factor targets and discovering relevant biological features Dustin T Holloway, Mark Kon, Charles DeLisi Biology Direct 2008, 3:22 (30 May 2008) |
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Database
BNDB – The Biochemical Network Database Jan Küntzer, Christina Backes, Torsten Blum, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof BMC Bioinformatics 2007, 8:367 (2 October 2007) The problem of the diversity of biochemical databases is made easier by their semantic integration into the Biochemical Network Database, which can model and visualize most biochemical processes.
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Proceedings
Fly-DPI: database of protein interactomes for D. melanogaster in the approach of systems biology Chung-Yen Lin, Shu-Hwa Chen, Chi-Shiang Cho, Chia-Ling Chen, Fan-Kai Lin, Chieh-Hua Lin, Pao-Yang Chen, Chen-Zen Lo, Chao A Hsiung BMC Bioinformatics 2006, 7(Suppl 5):S18 (18 December 2006) |
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Database
Svetlana Pacifico, Guozhen Liu, Stephen Guest, Jodi R Parrish, Farshad Fotouhi, Russell L Finley BMC Bioinformatics 2006, 7:195 (7 April 2006) |
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Software
VANTED: A system for advanced data analysis and visualization in the context of biological networks Björn H Junker, Christian Klukas, Falk Schreiber BMC Bioinformatics 2006, 7:109 (6 March 2006) |
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Methodology article
PathSys: integrating molecular interaction graphs for systems biology Michael Baitaluk, Xufei Qian, Shubhada Godbole, Alpan Raval, Animesh Ray, Amarnath Gupta BMC Bioinformatics 2006, 7:55 (7 February 2006) |