Research article
Network analysis of metabolic enzyme evolution in Escherichia coli
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* Corresponding author: Sara Light sara@sbc.su.se
Stockholm Bioinformatics Center, Department of Biochemistry and Biophysics, Stockholm Center for Physics, Astronomy and Biotechnology, Stockholm University, Stockholm SE-10691, Sweden
BMC Bioinformatics 2004, 5:15 doi:10.1186/1471-2105-5-15
Published: 18 February 2004Additional files
Additional File 1:
The text file additional_file_1.txt contains a list of some of the genes in E. coli which code for multifunctional enzymes. In this study these genes were separated into two partial genes because the functions could be clearly associated with different domains. Each line in the text file consists of the name for the partial gene, the EcoCyc ID for the enzyme associated with the gene, the EcoCyc gene ID and the gene's Blattner ID.
Format: TXT Size: 2KB Download file
Additional File 2:
The text file additional_file_2.txt contains enzymatic reactions from EcoCyc's reactions.dat file which were associated with complete EC numbers and did not have links to the enzyme objects in EcoCyc's enzrxns.dat file. These reactions were added to our study using information from KEGG [12] and BRENDA [21]. The enzymatic reactions are included in this file with the EcoCyc reaction ID, EC number, common name, left side reactants, right side reactants, genes and reaction direction.
Format: TXT Size: 15KB Download file