Table 3

Accuracy scores. The average accuracy, measured by the Q score, is reported for each method on each set of reference alignments.

Method

PREFAB

BAliBASE

SABmark

SMART


MUSCLE

0.648

0.896

0.430

0.856

MUSCLE-prog

0.634

0.883

0.427

0.837

FFTNS1

0.619

0.844

0.376

0.815

MUSCLE-fast

0.616

0.849

0.396

0.813

CLUSTALW

0.588

0.860

0.404

0.823

POA-blast

0.577

0.839

0.352

0.788

POA

0.576

0.834

0.280

0.797


Edgar BMC Bioinformatics 2004 5:113   doi:10.1186/1471-2105-5-113

Open Data