PubMatrix: a tool for multiplex literature mining
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* Corresponding author: Kevin G Becker beckerk@grc.nia.nih.gov
BMC Bioinformatics 2003, 4:61 doi:10.1186/1471-2105-4-61
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BioMed Central: 10 citations
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Research article
The functional cancer map: A systems-level synopsis of genetic deregulation in cancer Markus Krupp, Thorsten Maass, Jens U Marquardt, Frank Staib, Tobias Bauer, Rainer König, Stefan Biesterfeld, Peter R Galle, Achim Tresch, Andreas Teufel BMC Medical Genomics 2011, 4:53 (30 June 2011) |
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Methodology article
Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data Michael J Gilchrist, Mikkel B Christensen, Richard Harland, Nicolas Pollet, James C Smith, Naoto Ueno, Nancy Papalopulu BMC Bioinformatics 2008, 9:442 (17 October 2008) |
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Proceedings
Irena Spasić, Daniel Schober, Susanna-Assunta Sansone, Dietrich Rebholz-Schuhmann, Douglas B Kell, Norman W Paton BMC Bioinformatics 2008, 9(Suppl 5):S5 (29 April 2008) |
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Methodology article
Building pathway clusters from Random Forests classification using class votes Herbert Pang, Hongyu Zhao BMC Bioinformatics 2008, 9:87 (6 February 2008) |
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Methodology
PatentMatrix: an automated tool to survey patents related to large sets of genes or proteins Armin Lahm, Emanuele de Rinaldis Source Code for Biology and Medicine 2007, 2:4 (6 September 2007) |
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Software
PubNet: a flexible system for visualizing literature derived networks Shawn M Douglas, Gaetano T Montelione, Mark Gerstein Genome Biology 2005, 6:R80 (16 August 2005) PubNet is a web-based tool to extract several types of relationships returned by PubMed queries and map them into networks. |
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Review
Text-mining and information-retrieval services for molecular biology Martin Krallinger, Alfonso Valencia Genome Biology 2005, 6:224 (28 June 2005) A range of text-mining applications have been developed recently that will improve access to knowledge for biologists and database annotators. |
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Software
CoPub Mapper: mining MEDLINE based on search term co-publication Blaise TF Alako, Antoine Veldhoven, Sjozef van Baal, Rob Jelier, Stefan Verhoeven, Ton Rullmann, Jan Polman, Guido Jenster BMC Bioinformatics 2005, 6:51 (11 March 2005) |
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Software
MILANO – custom annotation of microarray results using automatic literature searches Ran Rubinstein, Itamar Simon BMC Bioinformatics 2005, 6:12 (20 January 2005) |
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Software
Guohui Zhou, Xinyu Wen, Hang Liu, Michael J Schlicht, Martin J Hessner, Peter J Tonellato, Milton W Datta BMC Bioinformatics 2004, 5:46 (29 April 2004) |