Cross-platform comparison and visualisation of gene expression data using co-inertia analysis

Aedín C Culhane¹ , Guy Perrière² and Desmond G Higgins¹

¹Department of Biochemistry, Biosciences Institute, University College Cork, Cork, Ireland

²Laboratoire de Biométrie et Biologie Évolutive, UMR CNRS n°5558 Université Claude Bernard – Lyon 1, 43, bd. du 11 Novembre 1918, 69622 Villeurbanne Cedex, France

author email corresponding author email

BMC Bioinformatics 2003, 4:59doi:10.1186/1471-2105-4-59


Published:	21 November 2003

Additional files

Additional File 1:

Ross_5643.zip is a Microsoft Excel file that is compressed using winzip 8.0. It contains the pre-processed Ross (spotted microarray) data subsets described in this manuscript. The excel file contains 5 worksheets; the first is a readme which gives further details of the data. In addition details of the data contained in this file are given in additional file 2 'Readme.txt'.

Format: ZIP Size: 5.4MB Download file

Additional File 2:

Staunton_7129.zip is a Microsoft Excel file that is compressed using winzip 8.0. It contains the pre-processed Staunton (Affymetrix) data subsets described in this manuscript. The excel file contains 7 worksheets; the first is a readme which gives further details of the data. In addition details of the data contained in this file are given in additional file 2 'Readme.txt'.

Format: ZIP Size: 5.2MB Download file

Additional File 3:

Readme.pdf is a pdf (abode) file, which describes the pre-processed data, contained in additional files 1, 2, 4, 5.

Format: PDF Size: 118KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional File 4:

Ross_5643_KNN.txt is a tab delimited plain text file. Ross_5643_KNN.txt is worksheet 4 from Ross_5643.zip. This 5643 gene subset of the Ross data is described in detail in the manuscript. The IMAGE clone identifiers are in the first column, and sample (array) names in the first row.

Format: TXT Size: 2.1MB Download file

Additional File 5:

Staunton_1517_CS.txt is a tab delimited plain text file. Staunton_1517_CS.txt is worksheet 3 from Staunton_7129.zip. This 1517 gene subset of the Staunton data is described in detail in the manuscript. The Affymetrix probe identifiers are in the first column, and sample (array) names in the first row.