BMC Bioinformatics

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Cross-platform comparison and visualisation of gene expression data using co-inertia analysis

Aedín C Culhane*, Guy Perrière and Desmond G Higgins

BMC Bioinformatics 2003, 4:59 doi:10.1186/1471-2105-4-59

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Research   Open Access

Predicting qualitative phenotypes from microarray data – the Eadgene pig data set

Christèle Robert-Granié, Kim-Anh Lê Cao, Magali SanCristobal BMC Proceedings 2009, 3(Suppl 4):S13 (16 July 2009)

Research article   Open Access

Platform dependence of inference on gene-wise and gene-set involvement in human lung development

Rose Du, Kelan Tantisira, Vincent Carey, Soumyaroop Bhattacharya, Stephanie Metje, Alvin T Kho, Barbara J Klanderman, Roger Gaedigk, Ross Lazarus, Thomas J Mariani, J Steven Leeder, Scott T Weiss BMC Bioinformatics 2009, 10:189 (19 June 2009)

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Sparse canonical methods for biological data integration: application to a cross-platform study

Kim-Anh Lê Cao, Pascal GP Martin, Christèle Robert-Granié, Philippe Besse BMC Bioinformatics 2009, 10:34 (26 January 2009)

Methodology article   Open Access

Analysis with respect to instrumental variables for the exploration of microarray data structures

Florent Baty, Michaël Facompré, Jan Wiegand, Joseph Schwager, Martin H Brutsche BMC Bioinformatics 2006, 7:422 (29 September 2006)

Research article   Open Access Highly Accessed

Identical probes on different high-density oligonucleotide microarrays can produce different measurements of gene expression

LanMin Zhang, Sean J Yoder, Steven A Enkemann BMC Genomics 2006, 7:153 (15 June 2006)

Research article   Open Access Highly Accessed

Comparison of the latest commercial short and long oligonucleotide microarray technologies

Aurélien de Reyniès, Daniela Geromin, Jean-Michel Cayuela, Fabien Petel, Philippe Dessen, François Sigaux, David S Rickman BMC Genomics 2006, 7:51 (15 March 2006)

Software   Open Access

Storing, linking, and mining microarray databases using SRS

Antoine Veldhoven, Don de Lange, Marcel Smid, Victor de Jager, Jan A Kors, Guido Jenster BMC Bioinformatics 2005, 6:192 (27 July 2005)

Research article   Open Access

A study of inter-lab and inter-platform agreement of DNA microarray data

Huixia Wang, Xuming He, Mark Band, Carole Wilson, Lei Liu BMC Genomics 2005, 6:71 (11 May 2005)

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Three microarray platforms: an analysis of their concordance in profiling gene expression

David Petersen, GVR Chandramouli, Joel Geoghegan, Joanne Hilburn, Jonathon Paarlberg, Chang Kim, David Munroe, Lisa Gangi, Jing Han, Raj Puri, Lou Staudt, John Weinstein, J Carl Barrett, Jeffrey Green, Ernest S Kawasaki BMC Genomics 2005, 6:63 (5 May 2005)