Table 16

Maximum accuracy achievable over all methods on each family. AMPS (Opt): results for AMPS with BLOSUM75/10 parameters. AMPS (Max): result of taking the most accurate alignment for each family over all tested parameter combinations. All Methods (Max): result of taking the most accurate alignment over AMPS (Max) and alignments by all other methods.

Methods

Percentage Identity Range

Overall

0–10

10–20

20–30

30–50

50–100

AMPS (Opt)

22.17

60.25

81.27

92.33

98.93

89.85

AMPS (Max)

47.41

75.15

89.29

95.96

99.38

93.85

All Methods (Max)

52.48

77.75

90.83

96.41

99.43

94.52

Raghava et al. BMC Bioinformatics 2003 4:47   doi:10.1186/1471-2105-4-47