Table 1

RNA virus in current study.


Virus Name
 Type
 Acession Number
 DNA Stage
 Segment
 Acronym
 Size (nt)
 G
 A
 U
 C
 A+U%
ssRNA positive-strand viruses
 1
 Avian infectious bronchitis virus
 ss-RNA
 NC_001451
 No
 1
 ABV
 27608
 21.7
 28.9
 33.2
 16.2
 62.1

2
 Bovine coronavirus
 ss-RNA
 NC_003045
 No
 1
 BCoV
 31028
 21.8
 27.4
 35.5
 15.3
 62.9

3
 Equine arteritis virus
 ss-RNA
 NC_002532
 No
 1
 EV1
 12704
 26.0
 21.2
 27.1
 25.6
 48.3

4
 Human coronavirus 229E
 ss-RNA
 NC_002645
 No
 1
 HCoV
 27317
 21.6
 27.2
 34.6
 16.7
 61.7

5
 Lactate dehydrogenase-elevating virus
 ss-RNA
 NC_002534
 No
 1
 LDV
 14225
 25.9
 23.1
 28.2
 22.6
 51.3

6
 Murine hepatitis virus
 ss-RNA
 NC_001846
 No
 1
 MHV
 31357
 23.9
 26.0
 32.3
 17.9
 58.2

7
 Porcine epidemic diarrhea virus
 ss-RNA
 NC_003436
 No
 1
 PDV
 28033
 22.8
 24.7
 33.2
 19.2
 58.0

8
 Porcine reproductive and respiratory syndrome virus
 ss-RNA
 NC_001961
 No
 1
 PRV
 15428
 26.2
 21.7
 25.3
 26.7
 47.0

9
 SARS coronavirus
 ss-RNA
 NC_004718
 No
 1
 SAR
 29751
 20.8
 28.5
 30.7
 20.0
 59.2

10
 Feline coronavirus
 ss-RNA
 AY204704
 No
 1
 FCoV
 9979
 22.6
 27.9
 29.2
 20.3
 57.2

11
 Simian hemorrhagic fever virus
 ss-RNA
 NC_003092
 No
 1
 SFV
 15717
 22.6
 22.5
 27.4
 27.5
 49.9

12
 Transmissible gastroenteritis virus
 ss-RNA
 NC_002306
 No
 1
 TGV
 28586
 20.6
 29.5
 32.9
 17.0
 62.4

13
 Avian encephalomyelitis virus
 ss-RNA
 NC_003990
 No
 1
 AEV
 7055
 25.7
 27.0
 28.3
 19.0
 55.3

14
 Bovine viral diarrhea virus genotype 2
 ss-RNA
 NC_002032
 No
 1
 BDV
 12255
 25.2
 32.7
 22.3
 19.8
 54.9

15
 Foot-and-mouth disease virus C
 ss-RNA
 NC_002554
 No
 1
 FMV
 8115
 25.6
 24.8
 21.2
 28.5
 45.9

16
 Igbo Ora virus
 ss-RNA
 NC_001924
 No
 1
 IOV
 11821
 24.1
 31.1
 20.9
 24.0
 51.9

17
 Poliovirus
 ss-RNA
 NC_002058
 No
 1
 PV1
 7440
 23.0
 29.7
 24.0
 23.3
 53.7

18
 Rabbit hemorrhagic disease virus
 ss-RNA
 NC_001543
 No
 1
 RHV
 7437
 25.5
 25.9
 23.9
 24.7
 49.8

19
 Tamana bat virus
 ss-RNA
 NC_003996
 No
 1
 TBV
 10053
 21.5
 33.2
 28.3
 16.9
 61.6

20
 Yellow fever virus
 ss-RNA
 NC_002031
 No
 1
 YFV
 10862
 0.28
 0.27
 0.23
 0.21
 0.50
ssRNA negative-strand viruses
 21
 Avian paramyxovirus 6
 ss-RNA
 NC_003043
 No
 1
 APV
 16236
 0.23
 0.29
 0.25
 0.23
 0.54

22
 Bovine ephemeral fever virus
 ss-RNA
 NC_002526
 No
 1
 BFV
 14900
 0.20
 0.38
 0.28
 0.14
 0.66

23
 Bovine respiratory syncytial virus
 ss-RNA
 NC_001989
 No
 1
 BRV
 15140
 0.17
 0.38
 0.29
 0.17
 0.66

24
 Canine distemper virus
 ss-RNA
 NC_001921
 No
 1
 CDV
 15690
 0.22
 0.31
 0.26
 0.21
 0.57

25
 Human respiratory syncytial virus
 ss-RNA
 NC_001781
 No
 1
 HRV
 15225
 0.16
 0.39
 0.28
 0.18
 0.67

26
 Hantaan virus
 ss-RNA
 AF345636
 Yes
 2
 HV1
 11772
 0.21
 0.33
 0.29
 0.17
 0.62

27
 Influenza B virus
 ss-RNA
 NC_002208
 Yes
 8
 IBV
 14452
 0.22
 0.36
 0.24
 0.18
 0.60

28
 Measles virus
 ss-RNA
 NC_001498
 No
 1
 MV1
 15894
 0.24
 0.29
 0.23
 0.24
 0.53

29
 Respiratory syncytial virus
 ss-RNA
 NC_001803
 No
 1
 RSV
 15191
 0.16
 0.39
 0.28
 0.18
 0.67

30
 Reston Ebola virus
 ss-RNA
 NC_004161
 No
 1
 REV
 18891
 0.20
 0.31
 0.28
 0.21
 0.59

31
 Tioman virus
 ss-RNA
 NC_004074
 No
 1
 TV2
 15522
 0.21
 0.30
 0.26
 0.22
 0.57

The information about 31 RNA viruses being investigated in this study. Their accession number, abbreviation, genome size, number of segments and whether they undergo DNA stage are tabulated. The breakdown of the RNA nucleic acids and A+U contents are also shown.

Yap et al. BMC Bioinformatics 2003 4:43   doi:10.1186/1471-2105-4-43