The Longhorn Array Database (LAD): An Open-Source, MIAME compliant implementation of the Stanford Microarray Database (SMD)
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* Corresponding author: Vishwanath R Iyer vishy@mail.utexas.edu
BMC Bioinformatics 2003, 4:32 doi:10.1186/1471-2105-4-32
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BioMed Central: 9 citations
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Software
Patrick J Killion, Vishwanath R Iyer Genome Biology 2008, 9:R159 (12 November 2008) ArrayPlex is a software package that centrally provides a large number of flexible toolsets useful for functional genomics. |
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Research article
Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient Jianchao Yao, Chunqi Chang, Mari L Salmi, Yeung Hung, Ann Loraine, Stanley J Roux BMC Bioinformatics 2008, 9:288 (18 June 2008) |
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Software
Paul Honoré, Samuel Granjeaud, Rebecca Tagett, Stéphane Deraco, Emmanuel Beaudoing, Jacques Rougemont, Stéphane Debono, Pascal Hingamp BMC Genomics 2006, 7:240 (20 September 2006) |
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Software
SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology Bruz Marzolf, Eric W Deutsch, Patrick Moss, David Campbell, Michael H Johnson, Timothy Galitski BMC Bioinformatics 2006, 7:286 (6 June 2006) |
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Research
Jian Gu, Vishwanath R Iyer Genome Biology 2006, 7:R42 (31 May 2006) Global transcriptional profiling of human fibroblasts from two different tissue sources reveals distinct as well as conserved responses to different growth stimuli. |
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Database
Leandro Hermida, Olivier Schaad, Philippe Demougin, Patrick Descombes, Michael Primig BMC Bioinformatics 2006, 7:190 (5 April 2006) |
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Research article
MicroGen: a MIAME compliant web system for microarray experiment information and workflow management Sarah Burgarella, Dario Cattaneo, Francesco Pinciroli, Marco Masseroli BMC Bioinformatics 2005, 6(Suppl 4):S6 (1 December 2005) |
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Software
David Hancock, Michael Wilson, Giles Velarde, Norman Morrison, Andrew Hayes, Helen Hulme, A Joseph Wood, Karim Nashar, Douglas B Kell, Andy Brass BMC Bioinformatics 2005, 6:264 (3 November 2005) |
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Software
MARS: Microarray analysis, retrieval, and storage system Michael Maurer, Robert Molidor, Alexander Sturn, Juergen Hartler, Hubert Hackl, Gernot Stocker, Andreas Prokesch, Marcel Scheideler, Zlatko Trajanoski BMC Bioinformatics 2005, 6:101 (18 April 2005) The MARS suite for microarray data is fully MIAME compliant, and provides a lab notebook and laboratory information management system, integrated with a pipeline of image analysis, normalization, gene expression clustering and pathway mapping.
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