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Different transcription factors in AtTFDB Different transcription factor families in AtTFDB. The queries used to identify and classify TFs into different families are mentioned in column 3. |
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| Transcription Factor Family |
Number of Members in AtTFDB |
Members Identified Using |
|
|
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| AB13VP1 |
18 |
Identify domain and blast |
| Alfin-like |
7 |
Iterative blast |
| AP2-EREBP |
118 |
Identify domain and blast |
| ARF |
21 |
Identify domain and blast |
| ARR-B |
12 |
Identify domain and blast |
| bHLH |
147 |
Iterative blast |
| bZIP |
70 |
TAIR website |
| C2C2 (Zn) CO-like |
28 |
Identify domain and blast |
| C2C2 (Zn) Dof |
33 |
Identify domain and blast |
| C2C2 (Zn) GATA |
24 |
Identify domain and blast |
| C2C2 (Zn) YABBY |
4 |
Identify domain and blast |
| C2H2 |
91 |
Iterative blast |
| C3H |
125 |
Iterative blast |
| CCAAT-Dr1 |
2 |
Identified in literature |
| CCAAT-HAP2 |
10 |
Identify representative protein and blast |
| CCAAT-HAP3 |
10 |
Identify representative protein and blast |
| CCAAT-HAP5 |
13 |
Identify representative protein and blast |
| CPP (Zn) |
7 |
Iterative blast |
| E2F-DP |
8 |
Identified in literature |
| EIL |
6 |
Iterative blast |
| G2-like |
41 |
Identify domain and blast |
| GRAS |
24 |
Identify domain and blast |
| HB |
60 |
Identify domain and blast |
| HSF |
19 |
Identify domain and blast |
| MADS |
98 |
Iterative blast |
| MYB |
132 |
TAIR website |
| MYB-related |
8 |
Iterative blast |
| NAC |
89 |
Identify domain and blast |
| SBP |
17 |
Identify domain and blast |
| TCP |
25 |
Iterative blast |
| Trihelix |
29 |
Iterative blast |
| TUB |
10 |
Identify representative protein and blast |
| WRKY |
69 |
TAIR website |
| Orphans |
1 |
Documentation |
Davuluri et al. BMC Bioinformatics 2003 4:25 doi:10.1186/1471-2105-4-25 |
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