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Motifs derived by Gibbs sampling the indicated modules (see additional File 1). |
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| Module |
recovered factors (copies) |
novel motifs |
|
|
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| eve stripes 2, 3+7 |
kni(15), bcd(9), hb/cad(9) |
|
| eve stripes 5, 4+6 |
hb/cad(6), kni/hb/cad(12) |
RTTNSRCGSAAT(9), ATYCYGCARY/bcd (6) |
| h stripes 5,6,7 |
Kr(12), hb/cad(14) km (7) |
GRCNWG[T/G]TSNSA (9) |
| hb (both mods) |
Kr/tll(6), hb/cad(8) |
ATTTTCCNSC (9) |
| kni (1.1 k) |
Kr(7), tll(5), hb/cad(9) |
GWGWG[A/C]GWGYG(7) |
| Kr (700 bp) |
bcd(5), hb/cad(7) |
TWNTGATCCWS (6) |
| tll (3 mods) |
kni(9), cad(9), Kr(7), hb/cad(8) |
TCRAWSAAT/torRE (8) |
|
The criterion for a motif to match a known factor is given in Methods; copies refers to all sequences in the Gibbs derived motif. Only the consensus sequences of the most prominent unclassified motifs are shown with the abbreviations (R = A/G, W = A/T, S = G/C). Matches in italics are marginal and names linked by / co-occur within the same Gibbs motif, possibly on opposite strands. | ||
Rajewsky et al. BMC Bioinformatics 2002 3:30 doi:10.1186/1471-2105-3-30 |
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