Figure 9.

RIO output for the A. thaliana protein F28P22_13 analyzed against the Pfam adh_zinc domain alignment (PF00107) For an explanation of the output see Figure 7. For space reasons some lines of the output are not shown ("...") (the complete output is available at http://www.genetics.wustl.edu/eddy/forester/rio_analyses/RIO_paper/F28P22_13/ webcite). The output is sorted by orthology values. According to this RIO analysis the query sequence is likely to have no orthologs in this alignment. In contrast, the query probably has subtree-neighbors which are cinnamyl-alcohol dehydrogenases (EC 1.1.1.195), NADP-dependent alcohol dehydrogenases (EC 1.1.1.2), as well as other zinc-containing alcohol dehydrogenases.