Figure 5.

An illustration of subtree-neighbors The dotted subtrees could either be just one external node or a subtree of arbitrary size and topology. Species information is of no consequence for the concept of subtree-neighbors. The subtree-neighbors depicted here are for the default of k = 2.

Zmasek and Eddy BMC Bioinformatics 2002 3:14   doi:10.1186/1471-2105-3-14
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