Table 4

Effects of using only partial sequences during the Grouping step.

Matching Direction

% of Sequence Used

# of Groups

Analysis Time (~min)

5'

100

54

8

5'

90

45

1

5'

80

44

<1

3'

100

48

4

3'

90

37

1

3'

80

28

<1

Seguritan and Rohwer BMC Bioinformatics 2001 2:9   doi:10.1186/1471-2105-2-9