Table 4

Expression cut-offs from the Kaplan-Meier and from the rules.

Probe set IDa

NB-hypo-IIb

Overallc

Relapse freed


Expression cut-offe

Worsef

Expression cut-offe

Worsef


Kaplan-Meier

Rulex

Kaplan-Meier

Rulex

Kaplan-Meier

Rulex

Kaplan-Meier

Rulex


1

223172_s_at

107

73

high

high

107

73

high

high

2

200738_s_at

1553

1846

high

high

1553

1846

high

high

3

209446_s_at

69

57

high

high

69

57

high

high

4

226452_at

280

326

high

high

280

326

high

high

5

217356_s_at

706

721

high

high

706

721

high

high

6

236180_at

18

13

hgih

hgih

13

13

high

hgih

7

202022_at

101

131

low

low

138

131

low

low

8

224314_s_at

25

29

high

high

25

29

high

high

9

206686_at

36

26

high

high

36

26

high

high

10

223193_x_at

495

324

high

high

572

324

high

high

11

230630_at

19

23

low

low

35

23

low

low


a Probe sets ID indicates the numerical identified of the probeset.

b NB-hyp-II indicates the list of probe sets of the NB-hypo signature belonging to the rules.

c Overall indicates the survival time between the time of an event or last follow up and the time of diagnosis.

d Relapse free indicates the survival time between the first relapse and the time of diagnosis.

e Expression cut-off indicates the optimal cut-off point of each probe set resulting from the Kaplan-Meier scan and from the rules.

f Worse indicates whether high or low expression of a given probe set is associated to the worse survival. Worse survival are calculated from the Kaplan-Meier curve or from the conditions included into the rules.

Cangelosi et al. BMC Bioinformatics 2014 15(Suppl 5):S4   doi:10.1186/1471-2105-15-S5-S4

Open Data