Table 3

Comparison of NextClip and Skewer in processing Nextera long mate-pair (LMP) reads (ERA264981)
Reads for scaffolding Time for trimming adapters from Nextera LMP library (s) Assembly
Pieces N50 length Total length (Mbp)
None N/A 14097 19150 105.80
Paired end (PE) only N/A 11781 23496 104.84
PE and NextClip processed 1480.39 6080 309342 111.55
PE and Skewer processed 993.49 (single thread) 5806 312317 112.52
155.96 (8 threads)

Jiang et al.

Jiang et al. BMC Bioinformatics 2014 15:182   doi:10.1186/1471-2105-15-182

Open Data