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Open Access Highly Accessed Methodology article

Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads

Hongshan Jiang1*, Rong Lei1, Shou-Wei Ding2 and Shuifang Zhu1

Author Affiliations

1 Institute of Plant Quarantine Research, Chinese Academy of Inspection and Quarantine, Huixinli 241, Beijing, 100029 China

2 Department of Plant Pathology and Microbiology and Institute for Integrative Biology, University of California, Riverside, 900 University Ave, 92521 Riverside, USA

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BMC Bioinformatics 2014, 15:182  doi:10.1186/1471-2105-15-182

Published: 12 June 2014

Additional files

Additional file 1:

Tabular metrics of experiments on simulated data.

Format: XLSX Size: 44KB Download file

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Additional file 2:

Tabular metrics of experiments on real sRNA data.

Format: XLSX Size: 32KB Download file

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Additional file 3:

Tabular metrics of experiments on real PE RNA-Seq data.

Format: XLSX Size: 17KB Download file

Open Data

Additional file 4:

Commands for conducting experiments on real LMP data.

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Additional file 5:

Proofs of some fundamental lemmas.

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Additional file 6:

Details of extended algorithms.

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Additional file 7:

An example for adapter trimming of real PE data.

Format: PDF Size: 46KB Download file

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Open Data