Additional file 5.

Figure S5. True Positives and False Positives in Set-up 1 for 20M 100 bp-PE. Panels A (upper left) and B (upper right) depict TP (coral) and FP (aquamarine) bars for the compared methods when the alignment is annotation driven (CA and IA, respectively). Panels C (bottom left) and D (bottom right) are analogous to Panels A and B, when the alignment is data driven. The figure refers to Set-up 1 and 20M 100 bp-PE. The true number of expressed transcripts (i.e., 3726) is added as dashed horizontal line to each panel. The difference between the TP and the horizontal line represents the FN.

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Angelini et al. BMC Bioinformatics 2014 15:135   doi:10.1186/1471-2105-15-135