Table 5

Local structural alignment of the predicted residues for the SG protein from Mycobacterium avium (PDB ID 3q1t) with the corresponding residues of ABDH from Cyanobacterium anabaena.

POOL Ranking→

1

2

3

4

5

6

7


SG protein "ECH" (3q1t)

D155

H146

E244

D144

H44

C160

H156


Known ABDH (2j5s)

D153

H144

E243

D141

H43

l158

g154


The spatial positions 1 through 7 correspond to the ordinal values for the top seven residues in the POOL rank order for 3q1t.

Known catalytic residues for ABDH are shown in boldface. Residues predicted by POOL are in uppercase; residues not predicted are in lowercase. Note that the match between the residues of the SG protein and of ABDH is better than that of Table 4.

Wang et al. BMC Bioinformatics 2013 14(Suppl 3):S13   doi:10.1186/1471-2105-14-S3-S13

Open Data