Table 1

Total binding energies of the 19 epitope candidates (in descending HLA-B*4405 binding energy ranks).

Position

Sequence

Docked to HLA-B*4405 Docked to DM1-TCR


Energy

Rank

Energy

Rank


240

QEGRMNYYW

-1,006

1

-541.7

17

188

KEVLVLWGI

-921.8

2

-573.9

13

128

FERFEIFPK

-869.9

3

-594.6

12

482

FEFYHKCDN

-846.8

4

-743.9

2

259

FEATGNLVV

-815.2

5

-608.9

10

400

IEKMNTQFT

-775.8

6

-688.5

5

131

FEIFPKTSS

-752.9

7

-560.5

14

251

VEPGDKITF

-743.3

8

-599.1

11

229

PEIAIRPKV

-687.7

9

-548.9

15

50

LEDKHNGKL

-661.4

10

-552.1

16

274

MERNAGSGI

-644

11

-

-

514

REEIDGVKL

-643.8

12

-666.3

7

81

PECESLSTA

-633.3

13

-

-

446

LENERTLDY

-603.1

14

-621.1

9

412

KEFNHLEKR

-599.5

15

-737.2

3

493

MESVKNGTY

-543

16

-645

8

475

KEIGNGCFE

-519.6

17

-715.4

4

463

YEKVRSQLK

-475.3

18

-751.3

1

421

IENLNKKVD

-464.6

19

-666.7

6


Su et al. BMC Bioinformatics 2013 14(Suppl 2):S21   doi:10.1186/1471-2105-14-S2-S21

Open Data