Table 2

Baseline: the S-S bonds determined by MS2DB+, SVM, and CSP.

Proteins

Bonds determined by different methods


Known Linkages

MS2DB+

SVM

CSP


ST8Sia IV

142-292

142-292

142-292

142-292

156-356

156-356

156-356

156-356


Beta-LG

82-176

82-176

-

-

122-135

-

122-135

122-135

-

137-176

137-176


FucT VII

68-76

68-76

68-76

68-76

211-214

211-214

211-214

211-214

318-321

318-321

318-321

318-321


Β1,4-GalT

134-176

134-176

-

134-176

247-266

247-266

-

247-266

-

134-247

-


C2GnT-I

59-413

59-413

-

-

372-381

372-381

372-381

-

100-172

-

100-172

-

151-199

151-199

-

-

-

199-235

-

-

-

151-217

-

-

172-199

-

-

59-100


Lysozyme

24-145

24-145

24-145

-

48-133

48-133

-

-

-

-

82-98

-

-

94-112


FT III

81-338

81-338

-

-

91-341

-

-

-

-

81-91

81-91

-

338-341

338-341


False positives are indicated in italics.

Singh and Murad BMC Bioinformatics 2013 14(Suppl 2):S20   doi:10.1186/1471-2105-14-S2-S20

Open Data