Table 2

List of transcription factors that are circadian controlled in Cyanothece

TF

Training

Testing

Description


cce_0198

0.79

0.75

ntcB nitrogen assimilation transcriptional activator

cce_0461

0.83

0.82

ntcA nitrogen-responsive regulatory protein

cce_1898

0.88

0.58

patB transcriptional regulator (nitrogen fixation)

cce_0470

0.57

0.70

protein containing an Anti-sigma factor antagonist domain

cce_0601

0.65

0.82

rpoD RNA polymerase sigma factor

cce_0644

0.56

0.95

sigB RNA polymerase sigma factor

cce_0875

0.89

0.70

sigA RNA polymerase sigma factor

cce_2424

0.66

0.48

rpoE2 putative RNA polymerase sigma-E factor

cce_2782

0.58

0.74

LysR family transcriptional regulator

cce_2881

0.61

0.81

fur3 ferric uptake regulation protein

cce_3321

0.67

0.77

anti-sigma factor antagonist

cce_3519

0.60

0.60

phoU phosphate uptake regulator

cce_3594

0.75

0.83

sigD RNA polymerase sigma factor

cce_4142

0.72

0.78

rpoE1 RNA polymerase sigma-E factor

cce_3731

0.68

-0.66

rbcR putative Rubisco transcriptional regulator

cce_4701

0.65

0.74

gst3 glutathione S-transferase


Vinh et al. BMC Bioinformatics 2013 14(Suppl 2):S14   doi:10.1186/1471-2105-14-S2-S14

Open Data