Table 1

Mapping of circadian clock genes from S. elongatus to Cyanothece via Blast search with default parameters.

S. elongatus

Cyanothece

E-value

Cyanothece homolog description (BioCyc [11])


synpcc7942_1218: kaiA

cce_0424

5e-66

KaiA, circadian clock protein


synpcc7942_1217: kaiB

cce_0423

8e-44

KaiB1, circadian clock protein

cce_4715

3e-23

KaiB2, putative circadian clock protein

cce_0435

6e-18

KaiB3, circadian clock protein

cce_0145

4e-12

KaiB4, putative circadian clock protein


synpcc7942_1216: kaiC

cce_0422

0.0

KaiC1, circadian clock protein

cce_4716

1e-137

KaiC2, circadian clock protein


synpcc7942_0624: LdpA (light dependent period)

cce_2350

6e-76

putative alpha-helical ferredoxin


synpcc7942_0644: CikA (circadian input kinase)

cce_4751

1e-129

two-component hybrid sensor and regulator

cce_4289

7e-67

two-component hybrid sensor and regulator

cce_1138

2e-59

two-component hybrid sensor and regulator

cce_0164

1e-52

two-component sensor histidine kinase

cce_0220

4e-52

two-component sensor histidine kinase

cce_2232

3e-46

two-component sensor histidine kinase

cce_1185

7e-46

two-component hybrid sensor and regulator


synpcc7942_1168: CpmA (circadian phase modifier)

cce_2642

6e-67

circadian phase modifier CpmA-like protein


synpcc7942_0677: Pex (period extender)

-

-

-


synpcc7942_1891: LabA (low-amplitude and bright protein)

cce_3317

7e-78

hypothetical protein

cce_1947

1e-22

hypothetical protein


synpcc7942_2114: SasA (histidine kinase)

cce_1751

9e-81

adaptive-response sensory histidine kinase

cce_2546

3e-27

two-component sensor histidine kinase

cce_0888

4e-25

two-component sensor histidine kinase


synpcc79427942_0095: RpaA (response regulator)

cce_0298

1e-121

rpaA two-component response regulator

cce_4002

1e-47

rpaB two-component response regulator

cce_0970

9e-43

two-component transcription regulator

cce_1725

2e-41

two-component transcriptional regulatory protein

cce_0817

2e-41

two component transcriptional regulator


The matches with highest E-value are reported.

Vinh et al. BMC Bioinformatics 2013 14(Suppl 2):S14   doi:10.1186/1471-2105-14-S2-S14

Open Data