An amino acids list view and a temporal scatterplot showing avgP over time. Here we specify those cavity graphs that are formed either by amino acid 140 or by 170, i.e., the query equals 140 ∨ 170. Left: The leftmost column depicts the characterization of cavities with respect to the occurrences of amino acid types: hydrophobicity (gray), polarity (green), positively (blue) and negatively (red) charged. The middle column shows the time step the cavity occurs at. The rightmost column shows all the amino acids forming the cavity. Right: In the accompanied scatterplot we see the distribution of the selected cavities over time with respect to its "size", avgP.
Parulek et al. BMC Bioinformatics 2013 14(Suppl 19):S4 doi:10.1186/1471-2105-14-S19-S4