Table 3

SNPranker results comparison with a GWAS for Bipolar Disorder.

Gene

SNP ID

Chr

Position

Strand

Alleles

Function


ARNTL

rs900145

11

13250480

13250481

-

A/G

unknown (intergenic)

HTR2A

rs1575891

13

47096716

47096717

+

C/T

unknown (intergenic)

KLF12

rs9543325

13

72814628

72814629

+

C/T

unknown (intergenic)

KLF12

rs1886512

13

73418186

73418187

+

A/T

intron

RORA

rs3743266

15

58568804

58568805

-

A/G

unknown (UTR-3)

RORA

rs340029

15

58682256

58682257

+

C/T

intron

RORA

rs3784609

15

58697841

58697842

-

A/G

intron

RORA

rs11071559

15

58857279

58857280

+

C/T

intron

RORA

rs12912233

15

59054387

59054388

+

C/T

intron

RORA

rs809736

15

59117079

59117080

+

A/G

intron


Given the best results of the GWAS concerning the Bipolar Disorder [53], the table shows the SNPs that have been correctly predicted in our final SNPs table.

Merelli et al. BMC Bioinformatics 2013 14(Suppl 1):S9   doi:10.1186/1471-2105-14-S1-S9

Open Data