Table 4

Number of loci with p-values less than the given cutoff significance levels from different methods
Cutoff p-value Linear regression (I) Combined t-test (II) Combined Wilcoxon test (III) Combined BWS test (IV) From both I and IV From both II and IV From both III and IV
10-3 2038 2754 3143 3387 1884 2659 3081
10-4 1438 1879 2152 2321 1352 1795 2117
10-5 1120 1343 1495 1653 1059 1286 1479
10-6 894 982 1109 1222 844 931 1099

Huang et al.

Huang et al. BMC Bioinformatics 2013 14:86   doi:10.1186/1471-2105-14-86

Open Data