Open Access Research article

Learning a peptide-protein binding affinity predictor with kernel ridge regression

Sébastien Giguère1*, Mario Marchand1, François Laviolette1, Alexandre Drouin1 and Jacques Corbeil2

Author Affiliations

1 Department of Computer Science and Software Engineering, Université Laval, Québec, Canada

2 Department of Molecular Medicine, Université Laval, Québec, Canada

For all author emails, please log on.

BMC Bioinformatics 2013, 14:82  doi:10.1186/1471-2105-14-82

Published: 5 March 2013

Additional files

Additional file 1:

The proof of theorem 1. This file presents the proof of Theorem 1, therefore it proves that the GS kernel is symmetric positive semi-definite.

Format: PDF Size: 167KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 2:

AUC results for experiments on MHC-II. This file presents AUC values obtained for the experiments on MHC-II datasets and provides an explanation on how these values were calculated.

Format: PDF Size: 131KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data