Table 9

Alignment performance for 20 million read datasets with 4% error rate
76 bp 100 bp
# of aln true aln exe time # of aln true aln exe time
Hybrid aligner 19,424,609 19,137,326 9 min 54 sec 19,760,231 19,484,102 12 min 32 sec
GASSST 19,318,463 19,034,347 67 min 14 sec 19,524,380 19,255,520 86 min 16 sec
BWA 16,627,675 16,387,736 50 min 48 sec 16,687,423 16,464,717 70 min 57 sec

Chen et al.

Chen et al. BMC Bioinformatics 2013 14:67   doi:10.1186/1471-2105-14-67

Open Data