Table 6

The runtime composition for 1 million 100 bp reads
1 thread 2 threads 4 threads
Total execution time 38 sec 28 sec 28 sec
FPGA aligner runtime 13.4 sec 21.65 sec 21.57 sec
Proportion 35.2% 77% 77%

Chen et al.

Chen et al. BMC Bioinformatics 2013 14:67   doi:10.1186/1471-2105-14-67

Open Data