Table 2

Precision coverage function estimated after different QC procedures for duplicate- and multi-reads
multi multi no multi no multi
duplicate no duplicate duplicate no duplicate
# reads/sample 297,405 253,601 217,745 184,853
Mean −0.0078 −0.0079 −0.0112 −0.0132
Standard deviation 0.0214 0.0217 0.0222 0.0243
Absolute difference 0.0178 0.0181 0.0194 0.0207

Note: # reads/sample is the number of reads around isolated CpGs used as input for our estimation method.

van den Oord et al.

van den Oord et al. BMC Bioinformatics 2013 14:50   doi:10.1186/1471-2105-14-50

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