Table 1

Loading and simulation time in different simulation frameworks
Package Calculation Time (ms)
Odefy Network loading 467(±2)
Odefy Network simulation 583(±4)
SQUAD Network simulation 467(±0.3)
Jimena Network loading 3.7(±0.2)
Jimena Network simulation (time step: 0.1 s) 3.1(±0.4)
Jimena Network simulation (time step: 0.01 s) 28.2(±0.7)

The Arabidopsis thaliana flower organ specification network was loaded and simulated ten times in Odefy, SQUAD and Jimena, the mean calculation time is given in the table.

Karl and Dandekar

Karl and Dandekar BMC Bioinformatics 2013 14:306   doi:10.1186/1471-2105-14-306

Open Data