Table 9

Number of SNVs called by GATK-UGT with different cutoffs of HaplotypeScore
Cutoffs SNVs dbSNPs Non-dbSNPs
=0 613 419 194
≥ 1 638 431 207
≥ 2 653 437 216
≥ 5 680 448 232
≥ 10 693 453 240
≥ 13 703 459 244
≥ 20 707 462 245
≥ 30 718 468 250
all 729 478 251

Yu and Sun

Yu and Sun BMC Bioinformatics 2013 14:274   doi:10.1186/1471-2105-14-274

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