Table 6

Number of SNVs called by the SOAPsnp with different cutoffs of consensus score
Cutoffs SNVs dbSNPs Non-dbSNPs SNVs ≥ *
=0 41 10 31 968
=1 8 2 6 927
=2 11 5 6 919
=3 6 2 4 908
=4 25 8 17 902
=5 261 179 82 877
=6 125 101 24 616
=7 21 13 8 491
=8 58 36 22 470
=9 24 12 12 412
=10 13 4 9 388

* number of SNVs that have consensus score ≥ the cutoff values.

Yu and Sun

Yu and Sun BMC Bioinformatics 2013 14:274   doi:10.1186/1471-2105-14-274

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