Effect of changing the seed length using a real data set. The effect of changing the seed length on the BWT based tools. The tools were used to map real mRNA data set of 1 million reads of length 51 bps extracted from the Spretus mouse strain on the mouse genome version mm9. SOAP2 does not support seed length < 28.
Hatem et al. BMC Bioinformatics 2013 14:184 doi:10.1186/1471-2105-14-184