Effect of changing the number of mismatches using a real data set. Comparing the different tools while changing the total mismatches from 2 to 7. T-mms stands for the maximum allowed mismatches. A real mRNA data set of 1 million reads of length 51 bps extracted from the Spretus mouse strain and mapped against the mouse genome version mm9 was used in this experiment.
Hatem et al. BMC Bioinformatics 2013 14:184 doi:10.1186/1471-2105-14-184