Table 3

Comparison OMIM with other competing algorithms on PPI dataset

Algorithm

Module number

Module size

Discard rate

(%)

GO(-log P-value)


BP

MF

CC


OMIM

115

25.81

44.26

7.27

7.69

7.44

Newman

115

24.18

44.26

7.18

7.39

7.22

MCL

319

7.40

52.68

7.17

6.72

7.16

CPM

66

10.96

85.51

8.39

7.60

8.53


Module number: the number of modules obtained by each algorithm. Module size: the average size of modules in each algorithm. GO: the average -log P-values of all modules for biological process (BP), molecular functions (MF) and cellular component (CC).

Wang et al. BMC Bioinformatics 2012 13(Suppl 7):S4   doi:10.1186/1471-2105-13-S7-S4

Open Data