Sequence alignment comparison of two binary sequence alignment/map (BAM) files. Comparison of sequence alignment results from one sample with those from another sample. Results from dbSNP in a user-specified locus range are a useful means of detecting unknown SNPs.
Jung et al. BMC Bioinformatics 2012 13(Suppl 7):S12 doi:10.1186/1471-2105-13-S7-S12