Table 4

Comparison of SVseq2, SVseq1 and Pindel on running time.

Method

Max Event Size

SV Type

Time


SVseq2

None

DEL

1 m 48 s

None

INS

20 s


SVseq1

35, 000

DEL

8 m 40 s

1, 000, 000

DEL

82 m


Pindel

32, 368

DEL, INS, TD

7 m 40 s

517, 888

DEL, INS, TD

93 m


DEL stands for deletion, INS for insertion and TD for Tandem repeat.

Zhang et al. BMC Bioinformatics 2012 13(Suppl 6):S6   doi:10.1186/1471-2105-13-S6-S6

Open Data