Figure 4.

Given riboswitch sequence X83878/168-267 and initial structure S0, the minimum free energy structure, a structure output by RNAborMEAis most structurally similar to the XPT GENE ONstructure, as measured by NestedAlign[36]. The NestedAlign score for RNAborMEA is 87.5, while optimal score for RNAbor is 60.0, and for RNAshapes is 64.0.

Clote et al. BMC Bioinformatics 2012 13(Suppl 5):S6   doi:10.1186/1471-2105-13-S5-S6